The Complete Toolkit for
Shopify x QuickBooks Accounting!

  • Automatically manage sales, purchases, refunds, expenses, fees, taxes & COGS.
  • Categorize your Shopify sales at a granular level with channel-wise orders sync selection.
  • Accelerate your accounting with the best Shopify QuickBooks integration.
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Trusted by over 100+ great businesses

Two Ways to Sync Shopify with QuickBooks Choose What Fits Your Business

Summarised Sync to QuickBooks Journal Entries

With SyncTools, you can streamline your accounting by syncing summarised Shopify data directly into QuickBooks Online journal entries.

Instead of cluttering your books with thousands of individual transactions, SyncTools neatly consolidates your sales, refunds, taxes, balances, and COGS into a clean, accurate summary.

  • Reduce data overload in QuickBooks with simplified journal entries
  • Ensure accurate financial reporting by summarising sales, refunds, taxes, and COGS
  • Save time and improve efficiency by automating Shopify to QuickBooks journal entry sync
  • Perfect for multi-store, multi-region businesses needing clear financial insights

Take control of your Shopify accounting with a smarter, faster, and cleaner sync to QuickBooks Online.

SyncTools integration syncing Shopify orders refunds payouts COGS with QuickBooks journal entries summarized daily or monthly

Individual Transaction Sync to QuickBooks

SyncTools ensures every Shopify order, payment, product, customer, refund, fee, and COGS is synced individually into QuickBooks Online with perfect accuracy.

This one-to-one sync gives you a detailed, transparent view of your e-commerce accounting.

  • One-to-one transaction mapping for complete accuracy
  • Sync orders, payments, products, customers, refunds, fees, and COGS seamlessly
  • Get real-time financial insights with every Shopify transaction in QuickBooks Online
  • Ideal for businesses needing detailed transaction-level reporting

With SyncTools, your Shopify data flows effortlessly into QuickBooks, giving you the precision and depth needed for accurate financial management.

SyncTools one-to-one transaction mapping between Shopify orders, payments, refunds, fees and QuickBooks invoices

Shopify accounting, stress-free!

SyncTools automates Shopify QuickBooks accounting for accurate books and easy reconciliation.

Visual showing Shopify sales and payment summary seamlessly mapped to QuickBooks profit and loss and balance sheet accounts
Visual showing Shopify sales and payment summary seamlessly mapped to QuickBooks profit and loss and balance sheet accounts

Auto-Categorize by Country and State

SyncTools saves you hours by automatically categorizing income and expenses not just by country, but also by state. This ensures highly accurate, detailed, and organized financial reports in QuickBooks Online.

  • Simplify multi-region and multi-state accounting
  • Gain deeper insights into profits and taxes by country and state
  • Save hours on manual categorization and reporting

Take control of your global and regional finances with precision, and make better decisions with clear, structured reporting.

Shopify to QuickBooks automated categorization of sales, refunds, shipping, and discounts by country and state
Shopify to QuickBooks automated categorization of sales, refunds, shipping, and discounts by country and state

Know Which Products Drive Revenue

SyncTools streamlines your accounting by organizing income and expenses by product category, giving you deeper insights into which items drive your revenue.

  • Understand your top performing categories.
  • Organize your books by Shopify product attributes like type, category, tags, or collections.
  • Easily create custom categories to suit your needs.
Shopify product collections like T-shirt and Shirt mapped to QuickBooks profit and loss accounts for sales, refunds, and net revenue
Shopify product collections like T-shirt and Shirt mapped to QuickBooks profit and loss accounts for sales, refunds, and net revenue

Track Revenue by Sales Channel

Effortlessly track your income and expenses by Shopify sales channels with SyncTools. Get a clear breakdown of where your revenue is coming from, all in one place.

  • See performance across POS, Online Store, Meta, YouTube & more.
  • Accurately track sales, fees, refunds as per channel.
Shopify sales data from Facebook and YouTube channels automatically categorized in QuickBooks profit and loss for accurate revenue tracking
Shopify sales data from Facebook and YouTube channels automatically categorized in QuickBooks profit and loss for accurate revenue tracking

Effortless Reconciliation, Maximum Accuracy

SyncTools automatically matches Shopify payout deposits with your bank statements, eliminating manual work and errors.

  • 100% accurate matching of payouts and deposits.
  • Save hours on manual reconciliation.
  • Ensure error–free, clean financial records.
Shopify payouts automatically matched with QuickBooks deposits for seamless reconciliation and accurate financial recordkeeping

Know Your True Profit

SyncTools consolidates your sales, refunds, shipping costs, and inventory valuations to give you a clear picture of your true net profit no guesswork, just accurate insights.

  • Sync all revenue and expense details seamlessly.
  • Track inventory value to ensure accurate calculations.
  • Calculate true net profits with precise COGS data.
QuickBooks profit and loss and balance sheet breakdown showing income, liabilities, and assets for Shopify accounting accuracy
QuickBooks profit and loss and balance sheet breakdown showing income, liabilities, and assets for Shopify accounting accuracy

Deferred Revenue, Simplified!

SyncTools helps you handle deferred revenue effortlessly, ensuring income is recognized only when the related services or products are delivered.

  • Automatically track unearned revenue.
  • Stay compliant with IFRS 15 & ASC 606 automatically.
  • Pay taxes only on recognized revenue, not total sales.
  • Perfect for subscription based businesses revenue recorded when orders are fulfilled.
Line chart showing comparison of recognized and deferred revenue with visual insight into SaaS accounting and revenue recognition trends

Set up in just 3 easy steps

1

Connect

2

Configure

3

Auto-Sync

Empower Your Business
with the Smartest
Accounting Automation

  • Save Time to Focus on Growth
  • Clarity with True Profit Insights
  • Payouts Synced, Reconciliation Done!
  • Deferred Revenue, Simplified!
  • Built for Multi Channel Accounting
  • Data Security You Can Trust
Two professionals discussing accounting automation using SyncTools platform, empowering businesses with smart financial technology

How SyncTools elevates Shopify Commerce?

Increased efficiency

With the ability to sync sales, purchase, refunds, summarized sales, and COGS (cost of goods sold), your business can streamline its financial operations and reduce the time and effort required for manual data entry and reconciliation.

Improved accuracy

In eCommerce, manual data entry can result in errors, which can have significant financial consequences. By automating the process with your Shopify QuickBooks integration, you can improve the accuracy of your financial data and reduce the risk of errors.

Better financial insights

With your product’s capability to sync and summarize sales and COGS, you can gain a clearer understanding of your business’s financial performance and make data-driven decisions that can help drive growth.

Time and cost savings

Automating the Shopify to QuickBooks integration can save your business time and money by reducing the need for manual data entry and reconciliation. This can also free up your team’s time to focus on other important tasks.

Manage your bookkeeping effortlessly

Take our 14-day free trial.

  • Trial begins immediately

  • No CC required

  • Change plans anytime

  • Cancel anytime

MonthlyYearlySave 12%

Free(Life-Time)

$0$0
USD/Month
USD/Year

  • Upto 200 transactions/month

Standard

$59
$623
USD/Month
USD/Year

  • Upto 2000 transactions/month

Add Ons

$ 5 per 100 additional transactions (for all plans)

$ 20 per business entity/months

Compare plans and features

Usage

Free (Life-Time)

Lite

Basic

Standard

Plus

Limits

Monthly Order Volume

Upto 200 transactions/month

Upto 200 transactions/monthy

Upto 500 transactions/month

Upto 2000 transactions/month

5000 transactions/month

Access to Historical Data

3 Months history

3 Months history

6 Months history

12 Months history

12 Months history

Supported Shopify Store

1 Store

1 Store

2 Stores

5 Stores

5 Stores

Linked QuickBooks Accounts

1

1

2

3

3

Additional Users Accounts

1

2

3

Unlimited

Unlimited

+

Features

Class and Location Mapping

not-allowed

allowed

allowed

allowed

allowed

COGS Synchronization

not-allowed

Monthly

Daily and monthly both

Daily and monthly both

Daily and monthly both

Tax Synchronization

allowed

allowed

allowed

allowed

allowed

Gift Card Synchronization

Default

Default

Default

Default

Default

+

Sales Data Grouping

By Payment Gateway

allowed

allowed

allowed

allowed

allowed

By Country

not-allowed

allowed

allowed

allowed

allowed

By Sales Channel

not-allowed

allowed

allowed

allowed

allowed

By Product Category

not-allowed

not-allowed

not-allowed

allowed

allowed

By Province/State

not-allowed

not-allowed

not-allowed

allowed

allowed

+

Summarized Sync

Mode

Manual

Manual & Auto

Manual & Auto

Manual & Auto

Manual & Auto

Frequency

Monthly

Daily, Weekly, Monthly

Daily, Weekly, Monthly

Daily, Weekly, Monthly

Daily, Weekly, Monthly

Send Sync Report via mail

not-allowed

Daily

Daily

Daily

Daily

Tax Threshold Notifications

not-allowed

allowed

allowed

allowed

allowed

Financial Summary by SyncTools

allowed

allowed

allowed

allowed

allowed

+

Individual Sync

Product, Customer, Sales

allowed

allowed

allowed

allowed

allowed

Tax, Refunds, Tips, COGS, Gift card

allowed
allowed
allowed
allowed
allowed

Categorisation based on Sales Channel

allowed
allowed
allowed
allowed
allowed

Payout and Fees

not-allowed
allowed
allowed
allowed
allowed

+

Other

Custom Development Services

allowed

allowed

allowed

allowed

allowed

Support

Email support, FAQs

Email support, FAQs

Phone Call, email support, FAQs

Phone Call, Zoom meeting, email support, FAQs

Phone Call, Zoom meeting, email support, FAQs

Want custom implementation in SyncTools-
Shopify QuickBooks connector?

Let us know what you’re looking for, and we will get it up and running.

Contact sales!

Customers who are Trusting US! Customers who are Trusting US!

Non incentivize reviews from real users.

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Tom brookes
None this morning, so that appears promising. Thanks so much for all the hars work, i really do value and appreciate it.
Heather cook
Fantastic news to hear you've worked out the issue, thank you to both yourself and your team for this resolution!
Barbara nichols
Swift response: Good communication
Harvey uppal
AWESOME: Excellent tool and has saved us so much time. Credit to the support team for being so helpful in setup and post-setup.
Jo turley
Great support: Had a problem with invoices not feeding, booked a call within 24 hours and the problem was fixed the same day. Very fast support, thank you
Gisela rivas
Great support: The tool is great and the support even more. Thanks
JonPaul fahy
Great connector, great support: Easy to use, excellent experience.
Joanna hawkins
Great support: All queries we have had have been answered in a reasonable time frame and have always been helpful
Deborah whitfield
Really good service: I have recently installed SyncTools and it is easy to use. Ran in to a bump when an update had knocked my connection. I contacted support of SyncTools and they worked quickly and kept me informed regularly and got me nicely connected. Now everything is running smoothly.
Nirav khiroya
Fantastic support: When dealing with APis there will always be the odd issue here and there. What I look out for is the service that is provided to resolve those issues. The guys at synctools have always been diligent and pro active about fixing any bugs that arise. Would highly recommend them.
Heather cook
Best Xero connector on the market: Excellent customer support and continuous development from an app that does exactly what it says on the tin without any hassle. Highly recommended Xero connector, the competition doesn't even come close.
Robert Morris
Reliable: Have been using the linnworks Xero connector for a couple of years now. It is very reliable and the developers are keen to improve it.
Geoff ainsworth
Excellent tool: Does what it says and connects seamlessly & if you have any issues the support is amazing!
Connie sturman
I just looked in the connector and it looks like they were able to get the purchase orders synced...thank the team for us. Thank you for your help
Jones
SyncTools consistently makes me feel like an all-powerful digital wizard.
Alastair kerr
1st Class software AND support: We had a complex process and challenging problem. Simply outstanding support to help sort our challenging LW workflow. The team at SyncTools helped us get started and then listened to our challenges and really engaged in helping us find a solution that fit our needs. Simply put - I'm hard to please - and these guys are just very highly recommended.
Tom brookes
Thanks for your response. May i just take a moment to recognise how helpful you have been since we startes using SyncTools. Previously we used ebusinessGuru, which frankly, was far inferior and their support was poor. So keep up the good work!
Sang nguyen
Great support: Need to customise syncing refund, took few weeks to implement then finally it works well now.
John fisher
Very good: app and customer service! fully recommend!
Haider ali
Excellent APP: Very easy to work with. Very knowledgable and understanding and open to any requests as well!
Tom brookes
Best in class: If you, like us, use both linnworks and Xero you'll likely find there aren't too many options to connect the two. Thankfully, there is SyncTools, which is a phenomenal tool, and far superior than the alternative that you may see in the app store. We sync our orders, refunds and purchase orders directly to Xero using this tool. It is executed well because there is a great understanding of both linnworks and Xero from their team. The support is incredible. So far, we have had some custom integration, and on the rare occasion there has been an issue with syncing, the team are promptly on hand and always find or develop a solution. Please keep up the phenomenal work and keep this app supported.

FAQ: Shopify + QuickBooks integration

SyncTools is an ecommerce accounting software that connects your Shopify store with QuickBooks Online. It automates the transfer of sales, refunds, taxes, and inventory data, helping you keep accurate financial records without manual effort.

SyncTools eliminates manual data entry, reduces accounting errors, and ensures real-time financial updates. This saves time, improves bookkeeping accuracy, and allows you to focus on growing your business.

Setup is quick and easy. Simply install SyncTools from the Shopify App Store, connect your QuickBooks Online account, configure your settings, and start syncing. Our guided onboarding and customer support make the process hassle-free.

Currently, SyncTools is designed for QuickBooks Online. If you need integration with QuickBooks Desktop, please contact our support team for alternative solutions.

Summarized sync combines all transactions for a selected period (daily, weekly, or payout-wise) into a single summarized entry in QuickBooks. This simplifies bookkeeping by reducing the number of transactions recorded while maintaining accurate financial data.

Use Summarized Sync when you want to keep QuickBooks clean and reduce the number of transactions recorded. Ideal for merchants with high order volume.

Use Individual Sync when you need detailed transaction-level entries in QuickBooks for deeper financial tracking. Best for businesses that require granular reporting.

Yes! SyncTools supports multi-store syncing, allowing you to connect multiple Shopify stores to a single QuickBooks account while maintaining separate financial tracking for each store.

Yes, SyncTools allows you to import up to 24 months of historical data from Shopify to QuickBooks. You can choose the date range for syncing during setup. You will need to subscribe to the correct plan based on total historical order volume.

Yes, SyncTools offers flexible customization options, including mapping fields, choosing which data to sync, and setting sync frequencies to match your business needs.

SyncTools automatically fetches product cost from Shopify orders and deducts them from each Shopify sale. This helps you understand your gross profit.

Yes! SyncTools allows you to overwrite the cost of product fetched from shopify, so that you can ensure that cost is inclusive of all types of costs related to procuring the product.

If you have any issues, you can check our Help Center, or documentation for quick solutions. For further assistance, follow these steps to contact our support team:

  1. Log in to your SyncTools account.
  2. Go to Get Support in the settings menu.
  3. Choose your preferred support option – Email or Phone.

Yes! SyncTools provides free customer support to help with setup, troubleshooting, and optimizing your integration.

Yes! We offer a free onboarding to guide you through the setup process and ensure everything is configured correctly. This is limited to 4 hours.