Trusted by Accounting and Finance Teams.
Two Ways to Sync WooCommerce with QuickBooks That Fits Your Business
Choose the sync method that works best for your workflow
One-Click Sync
Connect your WooCommerce store and QuickBooks account in seconds. Our intelligent sync engine handles everything automatically with zero configuration.
Custom Mapping
Configure advanced mapping rules to match your unique business workflows. Full control over how data flows between systems with flexible field mapping.
Grow Your Business Faster with the Amazing Features of WooCommerce-QuickBooks Online Integration for Accurate Financial Data
Comprehensive dashboard with real-time insights into your entire e-commerce operation
Sync WooCommerce transactions to QuickBooks Online
Sync all important transaction details such as WooCommerce sales, transaction fees, payment, discount, shipping, and tax. Sync purchase orders as bill, create vendor credit, refunds as refund receipt/credit memo, and summarized sales with product mapping for accurate P&L and balance sheet reports.
- Sync sales, fees, payment, discount, shipping, and tax
- Purchase orders as bill with vendor credit
- Refunds as refund receipt or credit memo
- Accurate P&L and balance sheet reports
Individual/Summarized sales sync
Sync sales data to QuickBooks Online at a granular level as an invoice, sales receipt, or estimate - individually or in summarized form - for flexible financial reporting and analysis.
- Invoice, sales receipt, and estimate sync
- Individual or summarized sales options
- Customize financial reporting workflows
- Flexible analysis by business needs
Track COGS and other metrics across all WooCommerce stores
Sync COGS data from WooCommerce to QuickBooks Online to track the cost of each product sold accurately and generate financial reports that reflect true profitability.
- Accurate cost of goods sold tracking
- Informed pricing and inventory decisions
- True profitability reporting
- Multi-store COGS visibility
Advance – Tax setting rules
Schedule taxes for USA, UK, and other markets with tax-setting rules based on country, region, and other tax rates.
- Country and region-wise tax rules
- Multi-market tax scheduling
- Subtotal or line item tax mapping
- Flexible tax rate configuration
Real-Time data sync
Sync WooCommerce data in real-time with QuickBooks Online so your accounting records are always up-to-date and you can make informed business decisions.
- Always up-to-date accounting records
- Latest financial data on demand
- Real-time order and payment sync
- Confident, data-driven decisions
Synchronize the payment entry to QuickBooks Online
SyncTools synchronizes payment entries to QuickBooks Online when an order is paid in WooCommerce, keeping your financial records consistently up-to-date.
- Automatic payment entry sync
- WooCommerce payment method mapping
- Consistent financial records
- Paid order status reflected in QuickBooks
Multi-store sync to QuickBooks Online
Effortlessly synchronize transactions from multiple WooCommerce stores to a single QuickBooks Online account.
- Multiple stores to one QuickBooks account
- Filter unwanted store orders
- Centralized financial reporting
- Streamlined multi-store accounting
Sync WooCommerce transactions as journal entry to QuickBooks Online
Synchronize WooCommerce transactions seamlessly as journal entries into QuickBooks Online on a daily, weekly, or monthly basis.
- Journal entry sync options
- Daily, weekly, or monthly frequency
- Payment and fulfillment filters
- Flexible manual order sync
Set up in just 3 easy steps
Get started in minutes with our simple setup process
Connect Your Accounts
Link your WooCommerce store and QuickBooks account with secure OAuth authentication in under 2 minutes.
Configure Settings
Choose your sync preferences, mapping rules, and automation settings with our guided setup wizard.
Start Syncing
Activate the integration and watch your data sync automatically in real-time. That's it!
Why Choose SyncTools?
Enterprise-grade features designed for WooCommerce users
Increased efficiency
Sync sales, purchases, refunds, summarized sales, and COGS to streamline financial operations and reduce manual data entry and reconciliation.
Improved accuracy
Automate the WooCommerce QuickBooks Online integration to improve financial data accuracy and reduce the risk of manual entry errors.
Better financial insights
Sync and summarize sales and COGS to gain a clearer understanding of business performance and make data-driven growth decisions.
Time and cost savings
Automating the WooCommerce and QuickBooks Online integration saves time and money while freeing your team to focus on other important tasks.
Manage your bookkeeping effortlessly
Choose the plan that fits your business needs
Compare Plans and Features
See which plan includes the features you need
Trusted by Teams Worldwide
Thousands of accounting firms and finance teams rely on SyncTools to streamline reconciliation and save hours every month.
Customers who are Trusting Us
Haider Ali
Business Owner
"Excellent app. Very easy to work with. Very knowledgeable, understanding, and open to any requests."
Tom Brookes
Finance Director
"Best in class. If you use Linnworks and Xero, SyncTools is a phenomenal tool, far superior to any alternative we've tried."
Deborah Whitfield
Customer
"I recently installed SyncTools and it is easy to use. The team worked quickly, kept me informed, and now everything runs smoothly."
Heather Cook
Customer
"Best Xero connector on the market. Excellent customer support and continuous development from an app that does exactly what it says."
Harvey Uppal
Customer
"AWESOME: Excellent tool and has saved us so much time. Credit to the support team for being so helpful in setup and post-setup."
Geoff Ainsworth
Customer
"Excellent tool: Does what it says and connects seamlessly & if you have any issues the support is amazing!"
Nirav Khiroya
Customer
"Fantastic support: The team has always been diligent and proactive about fixing any bugs that arise. Would highly recommend them."
Robert Morris
Customer
"Have been using the Linnworks Xero connector for a couple of years now. It is very reliable and the developers are keen to improve it."
Connie Sturman
Customer
"I just looked in the connector and it looks like they were able to get the purchase orders synced... thank the team for us. Thank you for your help."
FAQ: WooCommerce QuickBooks Integration
Everything you need to know about the integration
How long does it take to set up the integration?
Most users complete the setup in under 10 minutes. Simply connect your WooCommerce and QuickBooks accounts, configure your preferences, and you're ready to go. Our guided setup wizard walks you through each step.
Will historical data be synced?
Yes, you can choose to sync historical data from your WooCommerce store when you first connect. You can select the date range you want to import, making it easy to migrate from manual processes.
How often does data sync?
Data syncs in real-time as transactions occur. You can also configure scheduled syncs or trigger manual syncs at any time from the dashboard. All data is validated before syncing to ensure accuracy.
What happens if there's a sync error?
Our system automatically detects and alerts you of any sync errors. You'll receive notifications and can resolve issues directly from the dashboard with guided troubleshooting. Our support team is also available to help.
Can I customize which data gets synced?
Absolutely. You have full control over field mapping, sync filters, and automation rules. Our custom mapping feature lets you tailor the integration to your exact workflow and business requirements.
Is my data secure?
Yes. We use bank-level 256-bit SSL encryption and are SOC 2 Type II certified. Your data is encrypted both in transit and at rest. We never store your credentials and undergo regular security audits.
Do you support multiple WooCommerce stores?
Yes, the Professional and Enterprise plans support multiple WooCommerce stores. Each store can have its own sync settings and mapping rules while feeding into a single QuickBooks account.
What about fees and discounts?
SyncTools automatically tracks all transaction fees (WooCommerce, Stripe, PayPal), shipping costs, discounts, and refunds. These are properly categorized in QuickBooks for accurate profit calculations.
Also popular
Selling on Shopify? Shopify QuickBooks Online integration gives you the same automation with country/state categorization, sales channel breakdown, and a free plan up to 200 orders/month.