Trusted by Accountants, Bookkeepers, and Ecommerce Finance Teams
Two Sync Modes. Full Control Over Your Books.
SyncHub gives you both options used by modern ecommerce accountants: daily summary journals or per-order detailed sync. Switch modes at any time per store.
Summary Sync
One daily journal entry per platform, per store. Matches your payout exactly so reconciliation takes minutes, not hours. Pair it with the AI reconciliation tool for end-to-end automation. Recommended by accounting firms for stores doing 500+ orders a month.
Daily journal preview
How orders roll up
Feb 16, 2026
Gets summarized into a single journal entry which includes:
- Revenue
- Shipping
- Discount
- Fees
- Refund
- CoGs
- Inventory
- Liability (Tax + Gift card sales)
- One daily journal entry per sales channel
- Keeps your accounting file clean and fast
- Summaries reconcile to actual bank deposits
- Recommended for high-volume Shopify and Amazon sellers
Per-Order Sync
Every order, refund, and fee posted as its own invoice or sales receipt. Full audit trail per transaction. Best for B2B sellers, regulated industries, and accountants who need line-level visibility.
Sales Invoice
#3524
Feb 16, 2026
Bill to
John M. - Web
Hydrogen Inhaler SPE120
SKU 078171842559
Posted today
Each order becomes its own invoice or credit note.
Invoice #3524
PaidJohn M.
Invoice #3525
PaidSarah K.
Credit #CN-88
PostedJohn M.
- One invoice per order, credit note per refund
- Customer, SKU, and tax on every document
- Ideal for B2B and compliance-heavy workflows
AI Account Mapping
Automatically map Shopify payout categories to your Xero chart of accounts in minutes. AI analyzes your data and suggests the perfect matches no manual configuration needed.
Recommended by accounting firms managing high-volume e-commerce operations.
AI Account Mapping
Shopify payout categories to Xero
248 accounts analyzed · 6 suggestions ready
Gross sales
200 · Sales
Shopify Payments fees
404 · Merchant fees
Refunds
210 · Refunds
Sales tax collected
820 · GST Payable
Shipping revenue
260 · Shipping income
Gift card sales
215 · Gift card liability
Review suggestions
Apply all at once or adjust individual payout categories.
Gross sales
Excellentto 200 · Sales
Shopify Payments fees
Excellentto 404 · Merchant fees
Refunds
Goodto 210 · Refunds
Sales tax collected
Excellentto 820 · GST Payable
Key features
- Analyzes hundreds of accounts in minutes, not hours
- Confidence ratings on every suggestion (Fair/Good/Excellent)
- Apply all mappings at once or review individually
- Works across multiple countries and sales channels
AI Threshold Advisor
Stay compliant with tax registration thresholds across every region you operate in. AI monitors your sales and alerts you when approaching limits, backed by official regulatory sources.
Recommended for international sellers and multi-state operations.
Tax threshold monitoring
Alert when sales approach registration limits by state.
AI suggestions
Verified thresholds with official source links.
Texas
High confidence$500,000
Updated from $100,000
United Kingdom
High confidence£90,000
HMRC · VAT registration threshold
Key features
- Real-time alerts for each country and state threshold
- All suggestions verified against official sources (HMRC, State Tax Boards)
- See exact thresholds by region and update dates
- Proactive compliance planning to avoid penalties
Built to Handle Every Ecommerce Accounting Scenario
SyncHub covers the edge cases that break generic connectors: multi-currency, mixed payouts, partial refunds, bundles, multi-warehouse, and multi-jurisdiction tax.
Unified Sync Dashboard
Monitor every sale, fee, and tax entry across all stores from a single screen. Spot sync errors before your client does.
- Real-time sync health and error alerts
- Cross-platform revenue, fee, and tax visibility
- Activity timeline with full transaction history
- KPI tiles for orders, payouts, and net revenue
Smart Product and SKU Mapping
Map every product, variant, and bundle to the correct income, COGS, and class in QuickBooks, Xero, or Zoho Books. Rules apply automatically to every future order.
- Auto-detect SKUs and variants on first sync
- Per-product income and COGS account mapping
- Bundle and kit decomposition for accurate cost tracking
- Category, class, and location tagging
Multi-Jurisdiction Tax Configuration
Built for sellers shipping across borders. SyncHub categorises and posts sales tax correctly across US states, UK VAT, EU VAT (OSS/IOSS), Canadian GST/HST, and Australian GST.
- US state and local sales tax automation
- UK VAT, EU VAT, OSS/IOSS handling
- GST/HST and Australian GST support
- Tax agency payable mapping per jurisdiction
Multi-Store, Multi-Company Sync
Connect unlimited Shopify, Amazon, eBay, and WooCommerce stores to one or several accounting files. Built for agencies and multi-brand operators.
- One-to-many and many-to-one sync architecture
- Independent sync rules and schedules per store
- Per-client dashboards for accounting firms
- Bulk onboarding tools for partner agencies
Orders, Refunds, and Adjustments
Every order detail, partial refund, exchange, and chargeback synced and matched to the original transaction. No orphan entries.
- Real-time order-to-invoice posting
- Partial and full refund handling with credit memos
- Bundle, exchange, and store credit support
- Discount and gift card breakdowns preserved
Native Multi-Platform Connectors
Direct integrations built and maintained in-house. No middleware. No CSV imports. No Zapier glue.
Popular combinations: Amazon to Xero, Shopify to Sage, eBay to QuickBooks, and WooCommerce to Xero.
- Shopify, WooCommerce, Linnworks, Amazon, eBay, Etsy, Walmart, BigCommerce
- QuickBooks Online, QuickBooks Desktop, Xero, Zoho Books, Sage, NetSuite, Business Central
- API-first architecture with webhook support
- 99.9% uptime SLA on all connectors
Payment Gateway Reconciliation
Split payments by gateway, track fees per processor, and reconcile payouts to bank deposits automatically.
- Stripe, PayPal, Square, Klarna, Afterpay, and Shopify Payments
- Per-gateway fee categorisation
- Payout-to-deposit matching
- Currency conversion tracking for cross-border sellers
WooCommerce, Subscriptions, and Recurring Revenue
Full-featured WooCommerce sync including subscriptions, variable products, coupons, deposits, and custom shipping zones.
- WooCommerce Subscriptions and recurring billing
- Variable products, add-ons, and bundles
- Coupon, deposit, and partial payment handling
- Custom shipping zone mapping
Built Around Your Ecommerce and Accounting Stack
SyncHub connects natively to the ecommerce platforms you sell on and the accounting software your finance team already uses.
How SyncHub Posts Your Ecommerce Data
Five core engines work in sequence so your books match your stores and your payouts match your bank.
Real-Time Dashboard and Analytics
Watch every sync as it happens. Live transaction feed, fee breakdowns, error alerts, and historical trends in one view.
- Live transaction feed with status indicators
- Revenue, fees, and tax breakdowns at a glance
- Sync error detection and instant alerts
- Historical performance and trend analysis
Smart Product Mapping
SyncHub learns your catalog on first sync and applies your account, class, and COGS rules to every future order.
- Automatic SKU and variant recognition
- Custom income account assignment per product type
- Bundle and kit decomposition for accurate COGS
- Supports unlimited product categories and classes
Flexible Tax Configuration
Handle multi-state US sales tax, EU VAT, UK VAT, GST, and HST without manual journal corrections at month-end.
- US state and local sales tax automation
- EU VAT, UK VAT, and GST/HST support
- Custom tax agency and code mapping
- Tax liability account payables tracking
Automated Refund Sync
Every refund, return, and exchange matched back to the original order. Credit memos created without manual intervention.
- Full and partial refund processing
- Automatic credit memo or return receipt creation
- Payment gateway refund reconciliation
- Restocking and inventory adjustment tracking
Complete Order Management
Split orders, multi-warehouse fulfillment, B2B invoices, POS sales, and draft orders all post correctly with full traceability.
- Real-time order-to-invoice posting
- Multi-location and multi-warehouse support
- B2B and wholesale order handling
- Draft order and POS transaction sync
Why Accountants Choose SyncTools
When generic connectors break at volume, firms switch to SyncHub - backed by certified accounting engineers, not just software support.
15+ years connecting ecommerce stores to accounting systems at scale.
SyncHub is the connector layer accountants and ecommerce finance teams rely on when A2X, Webgility, or Synder can't handle their catalog, tax, or payout complexity.
Certified accounting team
Implementation and support led by certified QuickBooks and Xero accountants - not generic ticket queues.
Partner program for firms
Multi-client dashboards, firm pricing, and onboarding tools built for bookkeeping and accounting practices.
Guided migration
Structured onboarding from A2X, Webgility, Synder, or Finaloop with mapping review before go-live.
High-volume implementation
Dedicated implementation team for stores processing 5,000+ orders per month with custom sync rules.
FAQ: SyncHub
Everything you need to know about ecommerce accounting sync
Does SyncHub work with QuickBooks Online and QuickBooks Desktop?
Yes. SyncHub connects natively to both QuickBooks Online and QuickBooks Desktop, plus Xero, Zoho Books, Sage, NetSuite, and Business Central.
Can I sync Amazon and eBay orders to QuickBooks?
Yes. SyncHub posts Amazon and eBay orders, fees, refunds, and marketplace tax to QuickBooks, Xero, or Zoho Books in either summary or per-order mode.
What's the difference between summary sync and per-order sync?
Summary sync posts one daily journal entry per store. Per-order sync posts every transaction as an individual invoice. Most high-volume sellers use summary; B2B and compliance-heavy sellers use per-order.
Will SyncHub handle my historical orders?
Yes. SyncHub can backfill up to 24 months of historical data on request during onboarding.
Do you support multi-currency selling?
Yes. SyncHub handles multi-currency stores and posts conversions to your accounting software's base currency with FX gain/loss tracking.
How is SyncHub different from A2X, Webgility, or Synder?
SyncHub offers both summary and per-order sync in one product, includes native Linnworks support that A2X and Synder don't offer, and is backed by a certified QuickBooks accounting team for implementation help.
Start Automating Your Ecommerce Bookkeeping Today
Join the accountants, bookkeepers, and ecommerce sellers who use SyncHub to keep books accurate across Shopify, Amazon, eBay, QuickBooks, Xero, and Zoho Books.
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